Molecular and Cell Biology Resources

Biochemistry
Bioinformatics
Cell & Developmental Biology
Electronic Books

Methods & Protocols
Molecular Biology
Microbiology
Model Organism Databases
Neurosciences

Biochemistry

Books
- Biochemistry by Jeremy M. Berg, John L. Tymoczko, and Lubert Stryer, 2002, 5th ed. (PubMed Bookshelf)
- Biochemistry & molecular biology of plants edited by Bob B.
  Buchanan, Wilhelm Gruissem, Russell L. Jones (UCB Bioscience Library Reserve, QK861.B45 2000)
- Lehninger principles of biochemistry by David L. Nelson, Michael M.
  Cox (UCB Bioscience Library Reserve, QH345.L43 2008)
UCB Databases

SciFinder Scholar (web & client versions)
CrossFire Beilstein/Gmelin
See Database Lists at UCB Chemistry and Chemical Engineering Library

Selected Websites
- Advanced Light Source (Berkeley Lab)
- BioMagResBank (University of Wisconsin)
- ChemIDplus provides chemical records and structures. (NLM SIS)
- Protein Data Bank: a portal to biological macromolecular structures.
- PubChem provides information on the biological activities of small molecules. (NCBI)
- Swiss-Prot provides curated protein sequence database.
- WWW Virtual Library of Biochemistry and Cell Biology

Bioinformatics

Books
- Introduction to bioinformatics by Arthur M. Lesk (UCB Bioscience Library, QH507.L47 2008)
Selected Websites
- Bioinformatics.org
- Bioinformatics Resources at CSHL
- Bioinformatik.de
- DNA Data Bank of Japan (DDBJ)
- European Bioinformatics Institute (EBI)
- European Molecular Biology Laboratory (EMBL)
- Human Genome Project (HGP)
- International Nucleotide Sequence Database Collaboration (INSDC)
- International Society for Computational Biology (ISCB)
- National Center for Biotechnology Information (NCBI)
- National Center for Genome Resources
- National Human Genome Research Institute (NHGRI)
- Sequence Analysis on the Web
- Swiss Institute of Bioinformatics (SIB)
- Wellcome Trust Sanger Institute

Cell & Developmental Biology

Books
- The Cell - A Molecular Approach by Geoffrey M. Cooper, 2000, 2nd ed. (PubMed Bookshelf)
- Developmental Biology by Scott F. Gilbert, 2000, 6th ed. (PubMed Bookshelf)
- Molecular biology of the cell by Bruce Alberts (UCB Bioscience Library Reserve, QH581.2.M64 2008, also available online in 2002 edition on PubMed Bookshelf)
- Molecular cell biology by Harvey Lodish (UCB Bioscience Library Reserve, QH581.2.M655 2008, also available online in 1999 edition on PubMed Bookshelf)
Selected Websites
- Society for Developmental Biology
- WWW Virtual Library of Biochemistry and Cell Biology

Methods & Protocols

Comprehensive Resources

Current Protocols (Wiley InterScience)
- Contains Current Protocols in Bioinformatics, Cell Biology, Human Genetics, Molecular Biology, Microbiology, Neuroscience, Protein Science
Springer Protocols Formerly BioMedProtocols.com
Nature Protocols
Cold Spring Harbor Protocols
Methods in Enzymology

Selected Websites

Protocol Online Molecular biology, cell biology, immunology
Biowww.net
Comprehensive Protocol Collection
Frontiers in Bioscience Protocols

Molecular Biology Web Resources

Microbiology

Books
- Brock biology of microorganisms by Michael T. Madigan (UCB Bioscience Library Reserve, QR41.2.B77 2009)
- EcoSal (Escherichia coli and Salmonella: Cellular and Molecular Biology)
- Medical Microbiology, 1996, 4th ed. (PubMed Bookshelf)
- The Prokaryotes (Springer publication)
Selected Websites

Model Organism Databases

General
- NCBI Model Organisms Guide
- NIH Model Organisms Site
- BIOBASE Proteome Knowledge Library
- Biocurator.org The left sidebar contains links to several model organism databases.
- Ensembl Genome Browser - eukaryotic genomes collection
- Entrez Genome Project (NCBI)
- Model Organisms - WWW Virtual Library
Arabidopsis
- Arabidopsis Information Resources (TAIR)
- Arabidopsis Thaliana Genome View (NCBI)
C.elegans
- C. elegans II (PubMed Bookshelf)
- Caenorhabditis Elegans Genome (Ensembl)
- Nematode Genome Resources (NCBI)
- Sanger Institute C. elegans project
- WormAtlas
- WormBase
- WormBook
- Worm Protein Databases (BioBase)
Drosophila
- Berkeley Drosophila Genome Project
- Drosophila Genome Resources (NCBI)
- Drosophila Melanogaster Genome (Ensembl)
- Drosophila Melanogaster Genome View (NCBI)
- FlyBase
- FlyBrain (University of Arizona)
- The Interactive Fly
euGenes: Genetic Information for Eukaryotic Organisms
Human
- Online Mendelian Inheritance in Man (OMIM)
- Homo Sapiens Genome (Ensembl)
- Human Protein Databases (BioBase)
Mouse
- Mouse Genome Informatics (Jackson Lab)
- Mouse Genome Resources (NCBI)
- Mus Musculus Genome (Ensembl)
- Mus Musculus Genome View (NCBI)
- Mouse Protein Databases (BioBase)
- Mouse Genome Databases (University of Tennessee)
Prokaryotes
- Bacillus subtilis - Sublist| NRSub
- E. coli
  - EcoCyc - Encyclopedia of Escherichia coli K12 Genes and Metabolism
  - EcoSal
  - Institut Pasteur's Colibri
  - CGSC Stocks (Yale)
  - dam, dcm and mut strain
Rat
- Rat Genome Resources (NCBI)
- Rattus Norvegicus Genome (Ensembl)
- Rattus Norvegicus Genome View (NCBI)
Yeasts
- Saccharomyces Cerevisiae Genome (Ensembl)
- Saccharomyces Cerevisiae Genome View (NCBI)
- Saccharomyces Genome Project (Stanford)
- Saccharomyces Genome Resources (NCBI)
- Yeast Protein Databases (BioBase)

Neurosciences

Books
- Basic Neurochemistry, Molecular, Cellular, and Medical Aspects, George Siegel, 1999, 6th ed. (PubMed Bookshelf)
- Foundations of cellular neurophysiology by Daniel Johnston and
  Samuel Miao-sin Wu (UCB Bioscience Library Reserve, QP355.2.J64 1995)
- Neuroscience, Dale Purves, 2001, 2nd ed. (PubMed Bookshelf)
- Principles of neural science edited by Eric R. Kandel, James H.
  Schwartz, Thomas M. Jessell (UCB Bioscience Library Reserve, QP355.2.P76 2000)
Selected Websites
- Cognet (MIT)
- Flybrain (University of Arizona)
- Helen Wills Neuroscience Institute (Berkeley)
- Mouse Brain Library (University of Tennessee)
- NeuronDB (Yale)
- Neurosciences on the Net
- Society for Neuroscience